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GrainGenes Marker Report: k08337

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Locus	k08337
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 99
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS38D03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = T/C SNP structure (UNICODE) = CGAGCTTCACYCGGTCACCAT Parent 1 SNP sequence = CGAGCTTCACTCGGTCACCAT Parent 2 SNP sequence = CGAGCTTCACCCGGTCACCAT Recognized sequence for CAPs locus = CCGG
Probe for Locus	BaGS38D03
Locus	k08337
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative vesicle trafficking protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGGAGACTACTTGACGTGCG Right 5' - CTCACAGTTTGGCTCGTCTCT
Sequence	BJ468317
PCR size	457