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GrainGenes Marker Report: k08427

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Locus	k08427
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 217.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS16D15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AfaI SNP = C/G SNP structure (UNICODE) = GAAGAAACAASTACCCCACTG Parent 1 SNP sequence = GAAGAAACAACTACCCCACTG Parent 2 SNP sequence = GAAGAAACAAGTACCCCACTG Recognized sequence for CAPs locus = GTAC
Probe for Locus	BaGS16D15
Locus	k08427
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0035M09.9 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CACAGCAAAAACTCTTGGCA Right 5' - CCATTGGCTCGGAGTTTAGA
Sequence	AV920954
PCR size	355