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GrainGenes Marker Report: k08434

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Locus	k08434
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 191.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS32D08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/A SNP structure (UNICODE) = CAACAGGGGCMTGATCCCCAC Parent 1 SNP sequence = CAACAGGGGCCTGATCCCCAC Parent 2 SNP sequence = CAACAGGGGCATGATCCCCAC SNP = T/C SNP structure (UNICODE) = ATCATCGGTTYGTCATAAACT Parent 1 SNP sequence = ATCATCGGTTTGTCATAAACT Parent 2 SNP sequence = ATCATCGGTTCGTCATAAACT
Probe for Locus	BaGS32D08
Locus	k08434
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = endomembrane protein 70, putative [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CCCTCTCTCTTTCCCACTCA Right 5' - AGGACAGCGTGAAGGTGTG
Sequence	BJ466458
PCR size	358