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GrainGenes Marker Report: k08527

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Locus	k08527
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 250.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH42K01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = T/C SNP structure (UNICODE) = TGAAACTTAAYTGAGGTAGAC Parent 1 SNP sequence = TGAAACTTAATTGAGGTAGAC Parent 2 SNP sequence = TGAAACTTAACTGAGGTAGAC SNP = A/T SNP structure (UNICODE) = AGTAAATAAAWCAGAATGCCT Parent 1 SNP sequence = AGTAAATAAAACAGAATGCCT Parent 2 SNP sequence = AGTAAATAAATCAGAATGCCT SNP = A/G SNP structure (UNICODE) = CATACTGCAGRGCCTATTTTA Parent 1 SNP sequence = CATACTGCAGAGCCTATTTTA Parent 2 SNP sequence = CATACTGCAGGGCCTATTTTA
Probe for Locus	BaH42K01
Locus	k08527
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)] gb AAO18441.1 unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACTGCCATCAGTTCTCGCTT Right 5' - AAGAGGCTGTGCATATTGGG
Sequence	BM816112
PCR size	357