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GrainGenes Marker Report: k08540

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Locus	k08540
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 293.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH49M02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BspT104I SNP = C/G SNP structure (UNICODE) = CAGCACGTTCSAAACAATAGG Parent 1 SNP sequence = CAGCACGTTCCAAACAATAGG Parent 2 SNP sequence = CAGCACGTTCGAAACAATAGG Recognized sequence for CAPs locus = TTCGAA
Probe for Locus	BaH49M02
Locus	k08540
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0069D17.7 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTTCGCAACTCATGATGGTC Right 5' - GTCAGGCTCTTGGTGGAAAG
Sequence	BU989688
PCR size	358