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GrainGenes Marker Report: k08546

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Locus	k08546
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 109.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH13F14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = A/G SNP structure (UNICODE) = TTTTGTCGTCRACAGATGAAA Parent 1 SNP sequence = TTTTGTCGTCAACAGATGAAA Parent 2 SNP sequence = TTTTGTCGTCGACAGATGAAA Recognized sequence for CAPs locus = TCGA
Probe for Locus	BaH13F14
Locus	k08546
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)] gb AAM94931.1 unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTGAACCCCACTGGATCTTG Right 5' - GGTATTGGTTCCAAACACCG
Sequence	AV942680
PCR size	355