Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k08552

[Submit comment/correction]

Locus	k08552
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 167.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH50A15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = ClaI SNP = T/A SNP structure (UNICODE) = ATAAAAAAAAWTCGATCTTTA Parent 1 SNP sequence = ATAAAAAAAATTCGATCTTTA Parent 2 SNP sequence = ATAAAAAAAAATCGATCTTTA Recognized sequence for CAPs locus = ATCGAT
Probe for Locus	BaH50A15
Locus	k08552
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - ATGGTGAACTGGGAACGAAG Right 5' - GACGGGTACAAGGTGGAAGA
PCR size	358