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GrainGenes Marker Report: k08584

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Locus	k08584
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 12.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH30E11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/T SNP structure (UNICODE) = TTCTTGGCCTYGGATTCGGAC Parent 1 SNP sequence = TTCTTGGCCTCGGATTCGGAC Parent 2 SNP sequence = TTCTTGGCCTTGGATTCGGAC SNP = C/A SNP structure (UNICODE) = GGAATAATCCMCCTCATAACA Parent 1 SNP sequence = GGAATAATCCCCCTCATAACA Parent 2 SNP sequence = GGAATAATCCACCTCATAACA
Probe for Locus	BaH30E11
Locus	k08584
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = calreticulin interacted protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCTGACTCGACCACCAATCT Right 5' - CTGCACCGGTTGTTCATCTA
Sequence	AV946138
PCR size	356