GrainGenes Marker Report: k08617
Locus
k08617
Type
CAPS
Chromosome
7H
Map
Hv-HNxH602-7H 186.4
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaH27K19
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BsmAI SNP = G/A SNP structure (UNICODE) = TCTAAGAAGGRGACTCGTGTC Parent 1 SNP sequence = TCTAAGAAGGGGACTCGTGTC Parent 2 SNP sequence = TCTAAGAAGGAGACTCGTGTC Recognized sequence for CAPs locus = NNNNNGAGAC
Probe for Locus
BaH27K19
Locus
k08617
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = thiamine biosynthetic enzyme [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - AAGCATTCCCGAAGCAGTAA
Right 5' - ACCCAGATCAAAATGTTCGC
Sequence
BJ482468
PCR size
350
GrainGenes Marker Report: k08617
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