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GrainGenes Marker Report: k08631

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Locus	k08631
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 200.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH49O16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/T SNP structure (UNICODE) = TACTAGTTTTKTATATAAAAC Parent 1 SNP sequence = TACTAGTTTTGTATATAAAAC Parent 2 SNP sequence = TACTAGTTTTTTATATAAAAC SNP = T/G SNP structure (UNICODE) = ATATAAAACGKTCACGTAGCA Parent 1 SNP sequence = ATATAAAACGTTCACGTAGCA Parent 2 SNP sequence = ATATAAAACGGTCACGTAGCA SNP = G/A SNP structure (UNICODE) = AGGTCATTGCRCGGCCCTTCG Parent 1 SNP sequence = AGGTCATTGCGCGGCCCTTCG Parent 2 SNP sequence = AGGTCATTGCACGGCCCTTCG
Probe for Locus	BaH49O16
Locus	k08631
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative sugar transporter (alternative splicing product) [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AAGGATAGAACCAAACGGGG Right 5' - GACGAGGAGAAGAGGGAGGT
Sequence	BJ484298
PCR size	350