GrainGenes Marker Report: k08684
Locus
k08684
Type
CAPS
Chromosome
6H
Map
Hv-HNxH602-6H 17.4
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaH43I06
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = C/T SNP structure (UNICODE) = CGCGGCCGCGYGCCTGCCACA Parent 1 SNP sequence = CGCGGCCGCGCGCCTGCCACA Parent 2 SNP sequence = CGCGGCCGCGTGCCTGCCACA Recognized sequence for CAPs locus = GCGC
Probe for Locus
BaH43I06
Locus
k08684
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = ESTs C74776(E51022),C26123(C116681) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana cultivar
Type
PCR
PCR primers
Left 5' - AAAACGGGGAGAGGAGAAAA
Right 5' - ATTGACAGGGAAGAGTGGCA
Sequence
BJ483190
PCR size
352
GrainGenes Marker Report: k08684
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