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GrainGenes Marker Report: k08692

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Locus	k08692
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 158.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH28J15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = G/A SNP structure (UNICODE) = CCTTGGTGTCRAAATGAGACG Parent 1 SNP sequence = CCTTGGTGTCGAAATGAGACG Parent 2 SNP sequence = CCTTGGTGTCAAAATGAGACG Recognized sequence for CAPs locus = TCGA
Probe for Locus	BaH28J15
Locus	k08692
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0116K07.2 [Oryza sativa (japonica cultivar-group)] emb CAE02937.2 OSJNBa0014K14.9 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAAGGCGTCGATTTCTTCTC Right 5' - TTGCTCTCTTTGCCAGGATT
Sequence	AV945867
PCR size	290