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GrainGenes Marker Report: k08693

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Locus	k08693
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 204
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH36F21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = T/C SNP structure (UNICODE) = ATGTCTCCGCYGGCGGTGCGT Parent 1 SNP sequence = ATGTCTCCGCTGGCGGTGCGT Parent 2 SNP sequence = ATGTCTCCGCCGGCGGTGCGT SNP = A/C SNP structure (UNICODE) = CTTGCCATCCMCGTCGCCGTC Parent 1 SNP sequence = CTTGCCATCCACGTCGCCGTC Parent 2 SNP sequence = CTTGCCATCCCCGTCGCCGTC
Probe for Locus	BaH36F21
Locus	k08693
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Putative CAO protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GACACGATCGGTGAACAATG Right 5' - CAAAGCACAGAAATCAGCCA
Sequence	AV946837
PCR size	294