GrainGenes Marker Report: k08724
Locus
k08724
Type
CAPS
Chromosome
4H
Map
Hv-HNxH602-4H 35.9
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaH39P15
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = FokI SNP = C/T SNP structure (UNICODE) = GATCAACGGAYGATATCGAGA Parent 1 SNP sequence = GATCAACGGACGATATCGAGA Parent 2 SNP sequence = GATCAACGGATGATATCGAGA Recognized sequence for CAPs locus = GGATGNNNNNNNNN
Probe for Locus
BaH39P15
Locus
k08724
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana]
Type
PCR
PCR primers
Left 5' - CAGACGCAAACGAGAAAACA
Right 5' - AGGAGTCCACCCTTCACCTT
Sequence
AV947521
PCR size
348
GrainGenes Marker Report: k08724
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