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GrainGenes Marker Report: k08769

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Locus	k08769
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 31.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH36B07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = T/C SNP structure (UNICODE) = AGCAGCATGAYGAGGTCCTTG Parent 1 SNP sequence = AGCAGCATGATGAGGTCCTTG Parent 2 SNP sequence = AGCAGCATGACGAGGTCCTTG SNP = T/G SNP structure (UNICODE) = AGCCGGAGGTKAGCAGGGCCG Parent 1 SNP sequence = AGCCGGAGGTTAGCAGGGCCG Parent 2 SNP sequence = AGCCGGAGGTGAGCAGGGCCG SNP structure (UNICODE) = CGGCGTCCTCYTCCTCGGCAT Parent 1 SNP sequence = CGGCGTCCTCTTCCTCGGCAT Parent 2 SNP sequence = CGGCGTCCTCCTCCTCGGCAT SNP = A/G SNP structure (UNICODE) = GACCTCCTCCRTCTTGCTCTC Parent 1 SNP sequence = GACCTCCTCCATCTTGCTCTC Parent 2 SNP sequence = GACCTCCTCCGTCTTGCTCTC
Probe for Locus	BaH36B07
Locus	k08769
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0085F13.17 [Oryza sativa (japonica cultivar-group)] emb CAD39419.2 OSJNBa0027H06.1 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAAACTGAGCCAAGCAACAA Right 5' - GCTCACACAGTCGTTTTGGA
Sequence	AV946781
PCR size	319