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GrainGenes Marker Report: k08789

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Locus	k08789
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 153.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH62B09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/T SNP structure (UNICODE) = AATCCCTTGCYCAAGGCTTGA Parent 1 SNP sequence = AATCCCTTGCCCAAGGCTTGA Parent 2 SNP sequence = AATCCCTTGCTCAAGGCTTGA SNP = A/G SNP structure (UNICODE) = ATATGTAGAARGAGCATGACA Parent 1 SNP sequence = ATATGTAGAAAGAGCATGACA Parent 2 SNP sequence = ATATGTAGAAGGAGCATGACA SNP = G/A SNP structure (UNICODE) = GAAATCCAAARCCCTAGCCCA Parent 1 SNP sequence = GAAATCCAAAGCCCTAGCCCA Parent 2 SNP sequence = GAAATCCAAAACCCTAGCCCA
Probe for Locus	BaH62B09
Locus	k08789
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative helicase-like transcription factor [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGCATTGCATGCCTGTAGTT Right 5' - GTAGCTGGACCAAGGGTGTG
Sequence	BJ481833
PCR size	258