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GrainGenes Marker Report: k08831

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Locus	k08831
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 79.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH18C17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/A SNP structure (UNICODE) = GAAGTGTTGTMAACTTCAAAG Parent 1 SNP sequence = GAAGTGTTGTCAACTTCAAAG Parent 2 SNP sequence = GAAGTGTTGTAAACTTCAAAG SNP = T/C SNP structure (UNICODE) = TTACACCTTTYACCGTCTGAG Parent 1 SNP sequence = TTACACCTTTTACCGTCTGAG Parent 2 SNP sequence = TTACACCTTTCACCGTCTGAG SNP = T/A SNP structure (UNICODE) = CAGCATCTCCWGATGGACAGA Parent 1 SNP sequence = CAGCATCTCCTGATGGACAGA Parent 2 SNP sequence = CAGCATCTCCAGATGGACAGA
Probe for Locus	BaH18C17
Locus	k08831
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative prolyl endopeptidase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAGAAAGATCTACGGTGGGC Right 5' - AGGGCTGGATGATCTGTTTG
Sequence	AV920442
PCR size	273