Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k08877

[Submit comment/correction]

Locus	k08877
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 122.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH35A11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/T SNP structure (UNICODE) = AGTTATATTAWGGTTGAGACA Parent 1 SNP sequence = AGTTATATTAAGGTTGAGACA Parent 2 SNP sequence = AGTTATATTATGGTTGAGACA SNP = G/C SNP structure (UNICODE) = ACCACACAAGSCTCAGATCTT Parent 1 SNP sequence = ACCACACAAGGCTCAGATCTT Parent 2 SNP sequence = ACCACACAAGCCTCAGATCTT
Probe for Locus	BaH35A11
Locus	k08877
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative cytochrome P450 [Lolium rigidum]
Type	PCR
PCR primers	Left 5' - GCAAGACATCACGTGTGCTAC Right 5' - CATTGGAGGATGGAGACCAG
Sequence	BQ768221
PCR size	270