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GrainGenes Marker Report: k08921

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Locus	k08921
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 31.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH42J17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/A SNP structure (UNICODE) = GATGGATGGCRGAAGGGCGGG Parent 1 SNP sequence = GATGGATGGCGGAAGGGCGGG Parent 2 SNP sequence = GATGGATGGCAGAAGGGCGGG SNP = T/C SNP structure (UNICODE) = TTATTGTGGTYGGGGTGGTGG Parent 1 SNP sequence = TTATTGTGGTTGGGGTGGTGG Parent 2 SNP sequence = TTATTGTGGTCGGGGTGGTGG SNP = C/T SNP structure (UNICODE) = CGAGCTTCCTYTGGAGGAGAG Parent 1 SNP sequence = CGAGCTTCCTCTGGAGGAGAG Parent 2 SNP sequence = CGAGCTTCCTTTGGAGGAGAG
Probe for Locus	BaH42J17
Locus	k08921
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = GAMYB-binding protein [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - CAGTGGAAAACAATGATGCG Right 5' - CGCAATGTTAAACAGCGAGA
Sequence	AV945845
PCR size	375