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GrainGenes Marker Report: k08966

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Locus	k08966
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 26.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH17N17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = T/C SNP structure (UNICODE) = CCGGCACAAGYTCACATATCC Parent 1 SNP sequence = CCGGCACAAGTTCACATATCC Parent 2 SNP sequence = CCGGCACAAGCTCACATATCC SNP = A/G SNP structure (UNICODE) = CCGGATTTTCRCGTCCGATTC Parent 1 SNP sequence = CCGGATTTTCACGTCCGATTC Parent 2 SNP sequence = CCGGATTTTCGCGTCCGATTC
Probe for Locus	BaH17N17
Locus	k08966
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = zinc finger (GATA type) family protein [Arabidopsis thaliana] pir T47864 GATA transcription factor 4 - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - GGTGACTTTCCGGTCCAATA Right 5' - GGGGAAGTAGATCGAGGGAG
Sequence	AV835726
PCR size	373