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GrainGenes Marker Report: k08979

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Locus	k08979
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 246
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH56J21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = G/A SNP structure (UNICODE) = GCGAGCCGCGRGTATGCCTTG Parent 1 SNP sequence = GCGAGCCGCGGGTATGCCTTG Parent 2 SNP sequence = GCGAGCCGCGAGTATGCCTTG SNP = T/C SNP structure (UNICODE) = AAACAACCTTYGATAAAGTAT Parent 1 SNP sequence = AAACAACCTTTGATAAAGTAT Parent 2 SNP sequence = AAACAACCTTCGATAAAGTAT SNP = G/C SNP structure (UNICODE) = GCAGGAACCASGTGATGAACG Parent 1 SNP sequence = GCAGGAACCAGGTGATGAACG Parent 2 SNP sequence = GCAGGAACCACGTGATGAACG SNP structure (UNICODE) = GTGACACTACRATCATCGACA Parent 1 SNP sequence = GTGACACTACGATCATCGACA Parent 2 SNP sequence = GTGACACTACAATCATCGACA
Probe for Locus	BaH56J21
Locus	k08979
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = integral membrane protein, putative [Arabidopsis thaliana] pir T48227 hypothetical protein T7H20.110 - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - ACCCCGGAAGCTAAGATGAT Right 5' - AGTCGGAACATGCGGTACAC
Sequence	BJ484894
PCR size	383