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GrainGenes Marker Report: k09027

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Locus	k09027
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 46.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH48L11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/A SNP structure (UNICODE) = CTGCTTTCAARTTTCGCTGCT Parent 1 SNP sequence = CTGCTTTCAAGTTTCGCTGCT Parent 2 SNP sequence = CTGCTTTCAAATTTCGCTGCT SNP = C/T SNP structure (UNICODE) = CAAATTTATAYTCCCAGCCAA Parent 1 SNP sequence = CAAATTTATACTCCCAGCCAA Parent 2 SNP sequence = CAAATTTATATTCCCAGCCAA
Probe for Locus	BaH48L11
Locus	k09027
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative reductase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCGAATCCCGTAACTAACCA Right 5' - CGGCAGCTTATCTCAAGGAC
Sequence	AV943299
PCR size	384