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GrainGenes Marker Report: k09038

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Locus	k09038
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 186.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH50O08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = C/T SNP structure (UNICODE) = TTGATTCCTGYASCCTTTTCC Parent 1 SNP sequence = TTGATTCCTGCAGCCTTTTCC Parent 2 SNP sequence = TTGATTCCTGTACCCTTTTCC SNP structure (UNICODE) = CCGGCATCTCYGGTACTGYTT Parent 1 SNP sequence = CCGGCATCTCCGGTACTGCTT Parent 2 SNP sequence = CCGGCATCTCTGGTACTGTTT SNP = G/C SNP structure (UNICODE) = GATTCCTGYASCCTTTTCCTG Parent 1 SNP sequence = GATTCCTGCAGCCTTTTCCTG Parent 2 SNP sequence = GATTCCTGTACCCTTTTCCTG
Probe for Locus	BaH50O08
Locus	k09038
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = transmembrane protein [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - CGAACAATTTCGAAGCCATT Right 5' - TTGGTGTATTCGGGGAGGTA
Sequence	BJ550955
PCR size	383