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GrainGenes Marker Report: k09051

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Locus	k09051
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 127.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH54L03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = T/C SNP structure (UNICODE) = CACACGGCGAYCGGAGCTTCA Parent 1 SNP sequence = CACACGGCGATCGGAGCTTCA Parent 2 SNP sequence = CACACGGCGACCGGAGCTTCA Recognized sequence for CAPs locus = GATC
Probe for Locus	BaH54L03
Locus	k09051
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = GLUTAMINE SYNTHETASE ROOT ISOZYME 3 (GLUTAMATE--AMMONIA LIGASE) (GS112)
Type	PCR
PCR primers	Left 5' - GGCAAGTCAAATGTCATGGA Right 5' - ACCTGGAGGGAAGAGCTTGT
PCR size	384