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GrainGenes Marker Report: k09119

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Locus	k09119
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 31.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH63O04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = A/G SNP structure (UNICODE) = GTAAGTCCGCRACACATGGCG Parent 1 SNP sequence = GTAAGTCCGCAACACATGGCG Parent 2 SNP sequence = GTAAGTCCGCGACACATGGCG Recognized sequence for CAPs locus = CGCG
Probe for Locus	BaH63O04
Locus	k09119
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = transcription regulatory protein SNF2, putative [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TAAACACCTCATGGTGCCAA Right 5' - ATTTCCGATTCCTTGTGAGC
Sequence	BJ486978
PCR size	250