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GrainGenes Marker Report: k09166

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Locus	k09166
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 159.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH28K13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = Cfr13I SNP = G/C SNP structure (UNICODE) = GGCCGTGGCCSTGAGAGTCGT Parent 1 SNP sequence = GGCCGTGGCCGTGAGAGTCGT Parent 2 SNP sequence = GGCCGTGGCCCTGAGAGTCGT Recognized sequence for CAPs locus = GGNCC
Probe for Locus	BaH28K13
Locus	k09166
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Arabidopsis thaliana] gb AAO63313.1 At4g16060 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AGGTACACCGTACACAGCCC Right 5' - TGACAGGATAGACCCCAAGG
Sequence	AV835999
PCR size	250