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GrainGenes Marker Report: k09177

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Locus	k09177
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 234.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH47O14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = C/T SNP structure (UNICODE) = CGTACCGTGCYTGATACCCCG Parent 1 SNP sequence = CGTACCGTGCCTGATACCCCG Parent 2 SNP sequence = CGTACCGTGCTTGATACCCCG SNP = T/G SNP structure (UNICODE) = TGTGGATGGAKAATAACACGA Parent 1 SNP sequence = TGTGGATGGATAATAACACGA Parent 2 SNP sequence = TGTGGATGGAGAATAACACGA SNP structure (UNICODE) = TGCCATCCTGYATTGTTGAGC Parent 1 SNP sequence = TGCCATCCTGCATTGTTGAGC Parent 2 SNP sequence = TGCCATCCTGTATTGTTGAGC SNP structure (UNICODE) = TGTTGAATTAYTGACCTTATT Parent 1 SNP sequence = TGTTGAATTACTGACCTTATT Parent 2 SNP sequence = TGTTGAATTATTGACCTTATT SNP = A/T SNP structure (UNICODE) = AACACGAGGAWTTTTTGTTGT Parent 1 SNP sequence = AACACGAGGAATTTTTGTTGT Parent 2 SNP sequence = AACACGAGGATTTTTTGTTGT
Probe for Locus	BaH47O14
Locus	k09177
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative beta-glucosidase [Oryza sativa (japonica cultivar-group)] dbj BAB67933.1 putative beta-glucosidase homolog [Oryza sativa (japonica
Type	PCR
PCR primers	Left 5' - ACCGCTTACCACGGATACTG Right 5' - ACCCACAGATCAATCAAGGG
Sequence	BJ485143
PCR size	411