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GrainGenes Marker Report: k09178

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Locus	k09178
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 133.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH56L16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/G SNP structure (UNICODE) = GTTTAGACTGRACAGCAAAGC Parent 1 SNP sequence = GTTTAGACTGAACAGCAAAGC Parent 2 SNP sequence = GTTTAGACTGGACAGCAAAGC SNP = C/A SNP structure (UNICODE) = TTTCTTTTTCMAATCCAGAAA Parent 1 SNP sequence = TTTCTTTTTCCAATCCAGAAA Parent 2 SNP sequence = TTTCTTTTTCAAATCCAGAAA
Probe for Locus	BaH56L16
Locus	k09178
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative MAGE [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GTTATGCCTCTTTGACGGGA Right 5' - GACGGATATCCAGTTTCCCA
Sequence	BJ484917
PCR size	414