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GrainGenes Marker Report: k09209

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Locus
k09209
Type
CAPS
Chromosome
2H
Map
Hv-HNxH602-2H114.3
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare
Hordeum vulgare subsp. spontaneum
Probe
BaH42E05
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
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Restriction enzyme used for CAPS analysis = MboI
SNP = T/C
SNP structure (UNICODE) = TTCGCATGATYGCATCTACAG
Parent 1 SNP sequence = TTCGCATGATTGCATCTACAG
Parent 2 SNP sequence = TTCGCATGATCGCATCTACAG
Recognized sequence for CAPs locus = GATC



Probe for Locus
BaH42E05
Locus
k09209
Reference
ReferenceSato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type
PCR
PCR primers
Left 5' - TGCAAATTGCGTGAGTCTTC
Right 5' - GACGAAGCTGAGGAGGAATG
Sequence
BJ482953
PCR size
404