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GrainGenes Marker Report: k09230

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Locus	k09230
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 328.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH58A04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = G/A SNP structure (UNICODE) = GGAATGACTCRATCAGGTCGC Parent 1 SNP sequence = GGAATGACTCGATCAGGTCGC Parent 2 SNP sequence = GGAATGACTCAATCAGGTCGC Recognized sequence for CAPs locus = GATC
Probe for Locus	BaH58A04
Locus	k09230
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = UV-damaged DNA binding protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CGGCTACAAACAAACGGAAT Right 5' - CACCATGCTCCTGAAGAAGG
Sequence	AV945810
PCR size	399