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GrainGenes Marker Report: k09231

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Locus	k09231
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 71.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH53I11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MvaI SNP = T/G SNP structure (UNICODE) = ATCATCTCCTKGAGCACCAGC Parent 1 SNP sequence = ATCATCTCCTTGAGCACCAGC Parent 2 SNP sequence = ATCATCTCCTGGAGCACCAGC Recognized sequence for CAPs locus = CCWGG
Probe for Locus	BaH53I11
Locus	k09231
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0084K11.11 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CACCAACGGGTATATGGGAG Right 5' - GACTCCAGCAGCAACATTGA
Sequence	BJ477413
PCR size	401