GrainGenes Marker Report: k09240
Locus
k09240
Type
CAPS
Chromosome
6H
Map
Hv-HNxH602-6H 124.5
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaH46B06
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = C/A SNP structure (UNICODE) = AGACTCTGTCMCGGACTCCAG Parent 1 SNP sequence = AGACTCTGTCCCGGACTCCAG Parent 2 SNP sequence = AGACTCTGTCACGGACTCCAG Recognized sequence for CAPs locus = CCGG
Probe for Locus
BaH46B06
Locus
k09240
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = phosphatidylinositol transfer-like [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - GCACACTCACAAAACGCATC
Right 5' - CACACCAGGATCATGTACGC
Sequence
BJ483581
PCR size
418
GrainGenes Marker Report: k09240
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