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GrainGenes Marker Report: k09244

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Locus	k09244
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 96.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH54L11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaII SNP = G/A SNP structure (UNICODE) = CAAAACGCAGRTCCTCAGCCC Parent 1 SNP sequence = CAAAACGCAGGTCCTCAGCCC Parent 2 SNP sequence = CAAAACGCAGATCCTCAGCCC Recognized sequence for CAPs locus = GGWCC
Probe for Locus	BaH54L11
Locus	k09244
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TGGAAGCACTAAAGCATGACA Right 5' - GACCGCAAGAAGGTCAAGAA
Sequence	BJ485233
PCR size	403