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GrainGenes Marker Report: k09267

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Locus	k09267
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 55.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH49B13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = T/C SNP structure (UNICODE) = GATAAGCATGYACATACACAT Parent 1 SNP sequence = GATAAGCATGTACATACACAT Parent 2 SNP sequence = GATAAGCATGCACATACACAT SNP = G/C SNP structure (UNICODE) = CAAGCATATASAACATCAGCA Parent 1 SNP sequence = CAAGCATATAGAACATCAGCA Parent 2 SNP sequence = CAAGCATATACAACATCAGCA SNP = C/T SNP structure (UNICODE) = CAAGCTATGGYTTGTGTTCTT Parent 1 SNP sequence = CAAGCTATGGCTTGTGTTCTT Parent 2 SNP sequence = CAAGCTATGGTTTGTGTTCTT SNP = C/A SNP structure (UNICODE) = TTACCCAGGAMATTGAAATGG Parent 1 SNP sequence = TTACCCAGGACATTGAAATGG Parent 2 SNP sequence = TTACCCAGGAAATTGAAATGG
Probe for Locus	BaH49B13
Locus	k09267
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0019D06.23 [Oryza sativa (japonica cultivar-group)] dbj BAB16464.1 P0019D06.23 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTGAATTTGAGCAGTCCGGT Right 5' - GCAAAGACTCCGAAAACAGG
Sequence	BJ484134
PCR size	425