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GrainGenes Marker Report: k09280

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Locus	k09280
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 88.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH50C16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/T SNP structure (UNICODE) = TCTCTGCTCAYAAGCTTCATA Parent 1 SNP sequence = TCTCTGCTCACAAGCTTCATA Parent 2 SNP sequence = TCTCTGCTCATAAGCTTCATA SNP = G/T SNP structure (UNICODE) = CGGTACGCCCKAATTTCCTGG Parent 1 SNP sequence = CGGTACGCCCGAATTTCCTGG Parent 2 SNP sequence = CGGTACGCCCTAATTTCCTGG
Probe for Locus	BaH50C16
Locus	k09280
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCTTTCCAACTAGCCAACCA Right 5' - CTGCTTATTGCCCAAGGC
Sequence	BG367365
PCR size	429