GrainGenes Marker Report: k09294
Locus
k09294
Type
CAPS
Chromosome
4H
Map
Hv-HNxH602-4H 18.6
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaH50O22
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = T/A SNP structure (UNICODE) = ATAACTGGACWCAATTCCTTG Parent 1 SNP sequence = ATAACTGGACTCAATTCCTTG Parent 2 SNP sequence = ATAACTGGACACAATTCCTTG Recognized sequence for CAPs locus = GANTC
Probe for Locus
BaH50O22
Locus
k09294
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative puromycin-sensitive aminopeptidase (PSA) [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - TGATGCCGTTTTGAATACCA
Right 5' - TGACCGCCAAACATAACTCA
Sequence
BJ462506
PCR size
439
GrainGenes Marker Report: k09294
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