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GrainGenes Marker Report: k09301

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Locus	k09301
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 159.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH34J11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/G SNP structure (UNICODE) = CTTCTCTCCGRAGGGCGTCAA Parent 1 SNP sequence = CTTCTCTCCGAAGGGCGTCAA Parent 2 SNP sequence = CTTCTCTCCGGAGGGCGTCAA SNP = C/T SNP structure (UNICODE) = CTGATGATGTYTTGGCAAGGA Parent 1 SNP sequence = CTGATGATGTCTTGGCAAGGA Parent 2 SNP sequence = CTGATGATGTTTTGGCAAGGA
Probe for Locus	BaH34J11
Locus	k09301
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] pir T49077 hypothetical protein F4F15.90 - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - TGCGAGAGCGTAATGAAATG Right 5' - ACCTCTCATCCTTGCTGTGC
Sequence	AV918300
PCR size	420