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GrainGenes Marker Report: k09349

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Locus	k09349
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 228.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH36L17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = A/G SNP structure (UNICODE) = GGGTGAACTCRAAAATGCTAA Parent 1 SNP sequence = GGGTGAACTCAAAAATGCTAA Parent 2 SNP sequence = GGGTGAACTCGAAAATGCTAA Recognized sequence for CAPs locus = TCGA
Probe for Locus	BaH36L17
Locus	k09349
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative GTP-binding protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TACAGAACTTGATTCCGGGG Right 5' - CATCTGCAAGTTTGGCGTAA
Sequence	AV946901
PCR size	421