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GrainGenes Marker Report: k09371

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Locus	k09371
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 133.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH58P13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = G/A SNP structure (UNICODE) = CTACATAGAARCATGCAGGTG Parent 1 SNP sequence = CTACATAGAAGCATGCAGGTG Parent 2 SNP sequence = CTACATAGAAACATGCAGGTG SNP = A/T SNP structure (UNICODE) = TCGGAGGGAGWATTATAATTT Parent 1 SNP sequence = TCGGAGGGAGAATTATAATTT Parent 2 SNP sequence = TCGGAGGGAGTATTATAATTT SNP = C/T SNP structure (UNICODE) = TGTATGCCAAYCGTACCTTCT Parent 1 SNP sequence = TGTATGCCAACCGTACCTTCT Parent 2 SNP sequence = TGTATGCCAATCGTACCTTCT
Probe for Locus	BaH58P13
Locus	k09371
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative succinate dehydrogenase flavoprotein alpha subunit [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCAGTGTGTCGTGTGTTGACAT Right 5' - TTGGCCGACAGATTTGTGTA
Sequence	BJ552719
PCR size	369