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GrainGenes Marker Report: k09381

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Locus	k09381
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 145.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH30J08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 23 ] SNP = T/C SNP structure (UNICODE) = TTATTGTCTGYTTGTCACATG Parent 1 SNP sequence = TTATTGTCTGTTTGTCACATG Parent 2 SNP sequence = TTATTGTCTGCTTGTCACATG SNP = C/G SNP structure (UNICODE) = GGATTTCTGTSCTCATGAAAG Parent 1 SNP sequence = GGATTTCTGTCCTCATGAAAG Parent 2 SNP sequence = GGATTTCTGTGCTCATGAAAG SNP = G/A SNP structure (UNICODE) = AGGGAACATTRGAATCAGCCA Parent 1 SNP sequence = AGGGAACATTGGAATCAGCCA Parent 2 SNP sequence = AGGGAACATTAGAATCAGCCA SNP = A/G SNP structure (UNICODE) = TGAATTAACCRTACGGCTAAT Parent 1 SNP sequence = TGAATTAACCATACGGCTAAT Parent 2 SNP sequence = TGAATTAACCGTACGGCTAAT SNP structure (UNICODE) = GCATTCTCGGYCACCGCCTTG Parent 1 SNP sequence = GCATTCTCGGTCACCGCCTTG Parent 2 SNP sequence = GCATTCTCGGCCACCGCCTTG SNP = G/C SNP structure (UNICODE) = GCTTCGCTGCSTCTGAATTAA Parent 1 SNP sequence = GCTTCGCTGCGTCTGAATTAA Parent 2 SNP sequence = GCTTCGCTGCCTCTGAATTAA
Probe for Locus	BaH30J08
Locus	k09381
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = myotubularin - like protein [Arabidopsis thaliana] pir T48451 myotubularin-like protein - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - TCGAAGCGACAAACTTCAAA Right 5' - GACCCAGAGAAATCCGATGA
Sequence	BJ459396
PCR size	368