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GrainGenes Marker Report: k09385

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Locus	k09385
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 120
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH15L15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/A SNP structure (UNICODE) = AGACAACCACRTGAGAGCAGC Parent 1 SNP sequence = AGACAACCACGTGAGAGCAGC Parent 2 SNP sequence = AGACAACCACATGAGAGCAGC SNP = C/G SNP structure (UNICODE) = TGATCCCGTTSGCGTCGAGGT Parent 1 SNP sequence = TGATCCCGTTCGCGTCGAGGT Parent 2 SNP sequence = TGATCCCGTTGGCGTCGAGGT
Probe for Locus	BaH15L15
Locus	k09385
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = chloroplast nucleoid DNA-binding protein cnd41-like [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGGAAGCCCGAAGGTAGTTC Right 5' - AGAGGTGCTTTTCATCCCCT
Sequence	AV943087
PCR size	362