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GrainGenes Marker Report: k09388

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Locus	k09388
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 197
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH50F16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = C/T SNP structure (UNICODE) = ATCTCACTGTYATATATCTTT Parent 1 SNP sequence = ATCTCACTGTCATATATCTTT Parent 2 SNP sequence = ATCTCACTGTTATATATCTTT SNP = A/T SNP structure (UNICODE) = CAACAAAGCAWATTGCCTGTG Parent 1 SNP sequence = CAACAAAGCAAATTGCCTGTG Parent 2 SNP sequence = CAACAAAGCATATTGCCTGTG SNP = A/G SNP structure (UNICODE) = CCTTCGGCCTRCTAGGTATAT Parent 1 SNP sequence = CCTTCGGCCTACTAGGTATAT Parent 2 SNP sequence = CCTTCGGCCTGCTAGGTATAT SNP = G/A SNP structure (UNICODE) = AGCTTGGTGCRCCAAAATCCC Parent 1 SNP sequence = AGCTTGGTGCGCCAAAATCCC Parent 2 SNP sequence = AGCTTGGTGCACCAAAATCCC
Probe for Locus	BaH50F16
Locus	k09388
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = nodulin MtN3 family protein [Arabidopsis thaliana] pir T46218 MTN3-like protein - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - AGACTCGCAAATGATGGCTT Right 5' - TGCAGATTCCTTTCCTCACC
Sequence	BJ551528
PCR size	364