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GrainGenes Marker Report: k09397

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Locus	k09397
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 267.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH23K17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 22 ] SNP = A/G SNP structure (UNICODE) = CTCATCATCTRGTTCTCTACA Parent 1 SNP sequence = CTCATCATCTAGTTCTCTACA Parent 2 SNP sequence = CTCATCATCTGGTTCTCTACA SNP = A/T SNP structure (UNICODE) = TTTGTTTTCAWTCACATTCCA Parent 1 SNP sequence = TTTGTTTTCAATCACATTCCA Parent 2 SNP sequence = TTTGTTTTCATTCACATTCCA SNP = G/A SNP structure (UNICODE) = TGTATCATTGRTACATGGATA Parent 1 SNP sequence = TGTATCATTGGTACATGGATA Parent 2 SNP sequence = TGTATCATTGATACATGGATA SNP = C/T SNP structure (UNICODE) = ACAATGTGTCYCTCTGTATCA Parent 1 SNP sequence = ACAATGTGTCCCTCTGTATCA Parent 2 SNP sequence = ACAATGTGTCTCTCTGTATCA SNP structure (UNICODE) = GAAAGTACATRATTTGAGTGT Parent 1 SNP sequence = GAAAGTACATAATTTGAGTGT Parent 2 SNP sequence = GAAAGTACATGATTTGAGTGT SNP structure (UNICODE) = AAACACTGAARATAGGGATGA Parent 1 SNP sequence = AAACACTGAAAATAGGGATGA Parent 2 SNP sequence = AAACACTGAAGATAGGGATGA
Probe for Locus	BaH23K17
Locus	k09397
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = silencing group B protein [Zea mays]
Type	PCR
PCR primers	Left 5' - GACCCTGTATGATGGGATGG Right 5' - GAAGTCAGAGAAGGCCGATG
Sequence	BQ661570
PCR size	362