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GrainGenes Marker Report: k09404

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Locus	k09404
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 80.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH50G14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = C/T SNP structure (UNICODE) = GCAACAAGATYGAGAAATTTG Parent 1 SNP sequence = GCAACAAGATCGAGAAATTTG Parent 2 SNP sequence = GCAACAAGATTGAGAAATTTG Recognized sequence for CAPs locus = GATC
Probe for Locus	BaH50G14
Locus	k09404
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - CTGGAAGAAGAAGCACTGCC Right 5' - GGTGCAATTACTGGCGCTAT
PCR size	367