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GrainGenes Marker Report: k09416

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Locus	k09416
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 33.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH50N14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaII SNP = T/C SNP structure (UNICODE) = CTTCAAGGACYTTGCTGTTCC Parent 1 SNP sequence = CTTCAAGGACTTTGCTGTTCC Parent 2 SNP sequence = CTTCAAGGACCTTGCTGTTCC Recognized sequence for CAPs locus = GGWCC
Probe for Locus	BaH50N14
Locus	k09416
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = probable lipoxygenase (EC 1.13.11.12) - barley gb AAB60715.1 lipoxygenase [Hordeum vulgare]
Type	PCR
PCR primers	Left 5' - CTGGAGTGAACCATGCTGAA Right 5' - TTCCATCCCCTTACAACTGC
Sequence	L37359
PCR size	367