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GrainGenes Marker Report: k09419

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Locus	k09419
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 94.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH45B01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = KpnI SNP = A/G SNP structure (UNICODE) = AACCAAGCACRGTACCAGGAC Parent 1 SNP sequence = AACCAAGCACAGTACCAGGAC Parent 2 SNP sequence = AACCAAGCACGGTACCAGGAC Recognized sequence for CAPs locus = GGTACC
Probe for Locus	BaH45B01
Locus	k09419
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = gamma hydroxybutyrate dehydrogenase-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGCAGAACCAGCAATACGTT Right 5' - GACTTCAGCAACTTCCCGAC
Sequence	BJ553001
PCR size	370