Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k09427

[Submit comment/correction]

Locus	k09427
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 135.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH26P22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = G/A SNP structure (UNICODE) = AGAAGCATTGRTCAGATGACC Parent 1 SNP sequence = AGAAGCATTGGTCAGATGACC Parent 2 SNP sequence = AGAAGCATTGATCAGATGACC Recognized sequence for CAPs locus = GATC
Probe for Locus	BaH26P22
Locus	k09427
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = contains EST AU089749(S14720)~similar to Cicer arietinum ,CAA10129.1~unknown protein [Oryza sativa (japonica
Type	PCR
PCR primers	Left 5' - GTCAGGTTGAGGGGAACAGA Right 5' - AAGTGAAGGCACCACCAATC
Sequence	AV945520
PCR size	367