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GrainGenes Marker Report: k09429

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Locus	k09429
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 234
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH56D01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = G/A SNP structure (UNICODE) = AGCCATATCCRTCTGCAGTCA Parent 1 SNP sequence = AGCCATATCCGTCTGCAGTCA Parent 2 SNP sequence = AGCCATATCCATCTGCAGTCA SNP = C/T SNP structure (UNICODE) = GCGTACCATAYAGGCGAGGCG Parent 1 SNP sequence = GCGTACCATACAGGCGAGGCG Parent 2 SNP sequence = GCGTACCATATAGGCGAGGCG SNP = A/G SNP structure (UNICODE) = GATAATAGCCRCCAACAGGAG Parent 1 SNP sequence = GATAATAGCCACCAACAGGAG Parent 2 SNP sequence = GATAATAGCCGCCAACAGGAG SNP structure (UNICODE) = GGAGGTACACRTGCAAAACCT Parent 1 SNP sequence = GGAGGTACACATGCAAAACCT Parent 2 SNP sequence = GGAGGTACACGTGCAAAACCT SNP structure (UNICODE) = CTACACGCTTYCGTGTCAGCG Parent 1 SNP sequence = CTACACGCTTCCGTGTCAGCG Parent 2 SNP sequence = CTACACGCTTTCGTGTCAGCG
Probe for Locus	BaH56D01
Locus	k09429
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = squalene synthase [Oryza sativa (japonica cultivar-group)] gb AAS07223.1 squalene synthase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACAACATCCGACACCCAAAT Right 5' - CGACTTGAAGCTGCACTGAC
Sequence	BU983546
PCR size	368