Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k09439

[Submit comment/correction]

Locus	k09439
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 284.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH32G11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = Cfr13I SNP = G/A SNP structure (UNICODE) = GTCAGATGTGRTCCACCACGT Parent 1 SNP sequence = GTCAGATGTGGTCCACCACGT Parent 2 SNP sequence = GTCAGATGTGATCCACCACGT Recognized sequence for CAPs locus = GGNCC
Probe for Locus	BaH32G11
Locus	k09439
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - CCCGCAGTCCTTTGAAATTA Right 5' - AGCGGGCCTATTTTGATTCT
PCR size	367