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GrainGenes Marker Report: k09469

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Locus	k09469
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 99.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD25C22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 28 ] SNP = T/C SNP structure (UNICODE) = AGACTGCTTAYTCATGCATTG Parent 1 SNP sequence = AGACTGCTTATTCATGCATTG Parent 2 SNP sequence = AGACTGCTTACTCATGCATTG SNP = A/G SNP structure (UNICODE) = AATTCCGAACRGAGGGAGTAT Parent 1 SNP sequence = AATTCCGAACAGAGGGAGTAT Parent 2 SNP sequence = AATTCCGAACGGAGGGAGTAT SNP = G/A SNP structure (UNICODE) = GGGTGGCTGCRTGTGACAACA Parent 1 SNP sequence = GGGTGGCTGCGTGTGACAACA Parent 2 SNP sequence = GGGTGGCTGCATGTGACAACA SNP = A/C SNP structure (UNICODE) = AATGCCTCGAMTTAGTTATGA Parent 1 SNP sequence = AATGCCTCGAATTAGTTATGA Parent 2 SNP sequence = AATGCCTCGACTTAGTTATGA SNP = A/T SNP structure (UNICODE) = TTTTTCCTTAWCTATTATATC Parent 1 SNP sequence = TTTTTCCTTAACTATTATATC Parent 2 SNP sequence = TTTTTCCTTATCTATTATATC SNP = C/A SNP structure (UNICODE) = TAACTATCTCMTCATCTGGGT Parent 1 SNP sequence = TAACTATCTCCTCATCTGGGT Parent 2 SNP sequence = TAACTATCTCATCATCTGGGT SNP = C/G SNP structure (UNICODE) = ATGACAGATGSAACCAAGCAT Parent 1 SNP sequence = ATGACAGATGCAACCAAGCAT Parent 2 SNP sequence = ATGACAGATGGAACCAAGCAT
Probe for Locus	BaSD25C22
Locus	k09469
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative protein kinase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AATTACAGATGGAGGGCGTG Right 5' - TCGGAATGATCCTCATCCTC
Sequence	AV930770
PCR size	386